Scaffold Ga0209847_1014382

Overview

Basic Information

• Taxon OID: 3300026276
• Scaffold ID: Ga0209847_1014382
• Source Dataset Name: Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1730
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location

• Location Name: Arctic
• Coordinates
  • Lat. (^o): 68.6137
  • Long. (^o): -149.3144
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007671	Metagenome / Metatranscriptome	347	Y
F052223	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209847_10143821	F052223	N/A	SVFSGNELLQLTENTEDVSDGAGGAVNEFYDAMIKNYPYTEPLVDSFIAHTKADQNLGHADAFLEMCKSVPPMTRREVNDALNVAKDMAEHLLLFMDGIDTFYANFPVLPRVPCDPLSE
Ga0209847_10143822	F007671	AGG	VTGVPPGGSLGYTEADLQRIVERSIGRPLDSPERICDFLDSYTYLDDWRLNYSIQSVRSSLHAPRITCIDGAVLSYGLLELLFPQTKRALLAIHRRDPAKDEECGHCVTLFWNKEGLIGSFSKSSFPGLGHRPAVYRDAESVATSYARAYITEMKFEPLYFGVTTLEEAAPDLDWRHAGGSLNEISARLQACYAYGFAVE